warning dependency locfit is not available

Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. To permanently change this, add a line like setRepositories(ind = c(1:6, 8)) to your Rprofile.site file. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Running the command sudo dpkg-query -l | grep libcairo2-dev also shows that the Cairo package is fully installed. Equation alignment in aligned environment not working properly. and consider updating your R installation to the current version. Well occasionally send you account related emails. You didn't look in the right repository, Next, you should check to see if the package is available. Installation failure or a non-zero exit status, https://travis-ci.org/github/ramiromagno/gwasrapidd/jobs/740002831, https://packagemanager.rstudio.com/client/#/, init--> Install Errors. package 'Rbbg' is not available (for R version 2.15.2) Restart RStudio and then re-install the main package allowing for it to run through the updates on the dependencies. There is a package TSA from CRAN. in your system, start R and enter: Follow What was going on here? AC Op-amp integrator with DC Gain Control in LTspice, Radial axis transformation in polar kernel density estimate, Trying to understand how to get this basic Fourier Series, Difficulties with estimation of epsilon-delta limit proof. limit Follow Up: struct sockaddr storage initialization by network format-string. By clicking Sign up for GitHub, you agree to our terms of service and set n=N-1; Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Teams. If the package requires compiling code (e.g. Is the plyr package for R not available for R version 3.0.2? In my ~/.Renviron I had the following lines (from https://support.rstudio.com/hc/en-us/articles/200488488-Configuring-R-to-Use-an-HTTP-or-HTTPS-Proxy) causing the problem: solved the problem. "After the incident", I started to be more careful not to trip over things. Another possible warnings message you may get when interacting with CRAN mirrors is: Which may indicate the selected CRAN repository is currently be unavailable. AC Op-amp integrator with DC Gain Control in LTspice, Linear Algebra - Linear transformation question. dependency Cairo is not available for package ComplexHeatmap on Ubuntu 20.04 LTS, How Intuit democratizes AI development across teams through reusability. In this case, there may be a version in the CRAN (extras) repository (see setRepositories above). Why does it seem like I am losing IP addresses after subnetting with the subnet mask of 255.255.255.192/26? You'll need to provide more details from the error message. Not the answer you're looking for? I have had the same problem on Mac (R version 3.2.2) and Ubuntu (R version 3.0.2) and in both instances it was resolved simply by running this before the install.packages command. Linear regulator thermal information missing in datasheet. How to handle a hobby that makes income in US. Trouble Installing geoR package Differential expression analysis of RNA-seq expression profiles with biological replication. For problems with Ubuntu, check the README: This solution worked for me for debian for the package, When I try install.packages('foobarbaz', repos=NULL) I get error " Error in install.packages("pair", repos = NULL) : type == "both" cannot be used with 'repos = NULL'", Thanks for the comment - I think I forgot to write the, This way do solved my problem, but still update my R to the newest version(from. (Of course, you may need to install.packages("installr") first.). Share Improve this answer Follow answered Nov 28, 2022 at 20:27 Mark Thompson 143 9 Add a comment I run into this error ("package XXX is not available for R version X.X.X") when trying to install pkgdown in my RStudio on my company's HPC. The main problem of that was that I couldnt install RCurl. Well occasionally send you account related emails. How to handle a hobby that makes income in US. What happens if you use install.packages("rlang")? The package is not in the repositories you selected. Ideally, you would update your R installation to the latest version (3.4.3). Not the answer you're looking for? Is it possible to rotate a window 90 degrees if it has the same length and width? Documentation: Reference manual: locfit.pdf Downloads: Reverse dependencies: Linking: Please use the canonical form https://CRAN.R-project.org/package=locfitto link to this page. How would "dark matter", subject only to gravity, behave? package doMC NOT available for R version 3.0.0 warning in install.packages You can turn off this check by setting. Please what could be a reason for this error? Why do small African island nations perform better than African continental nations, considering democracy and human development? This worked for me in R 4.2.1 on Windows. Use of this site constitutes acceptance of our User Agreement and Privacy ), same here: Already on GitHub? Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. Hi, I would like to install the package DESeq2, however it doesnt look to work with the last version of R. > install.packages("DESeq2") Warning in install.packages : AC Op-amp integrator with DC Gain Control in LTspice, How do you get out of a corner when plotting yourself into a corner, Batch split images vertically in half, sequentially numbering the output files. In RStudio, go to the "Packages" tab and remove all the packages (click on the x) raising the "red-flags" in the required updates. At first I had about 10 errors regarding packages I couldnt install. Why does Mister Mxyzptlk need to have a weakness in the comics? Package bigmemory not installing on R 64 3.0.2, package "makeR" is not available (for version 3.0.2), package RTN is not available (for R version 3.0.1), package twitterR is not available (for R version 3.1.0), How to install 'Rcpp, package? I did install.packages('path/to/source/code/of/foobarbaz', type='source', repos=NULL) which worked for me in this occasion. EnhancedVolcano dependency proj4 failed to install in R 4.1 ```In .inet_warning (msg) : package 'proj4 ' is not available for Bioconductor version '3.13' # include your problematic code here with any corresponding output # please also include the results of running the following in an R session . I got "package is not available" What is the purpose of non-series Shimano components? There are several reasons why a package may not be available. @laresbernardo this will resolve itself in 24-48 hours when the macOS binary of textshaping is available. Equivalently for Bioconductor packages, you may need to update your Bioconductor installation. The first thing to test is have you spelled the name of the package correctly? The package is in a non-standard repository. At the very least, you will usually want CRAN to be selected, and CRAN (extras) if you use Windows, and the Bioc* repositories if you do any biological analyses. package syncwave/mvcwt is not available (for R version 3.0.2), package diamonds is not available (for R version 3.0.0). If pkg-config. Is it possible to rotate a window 90 degrees if it has the same length and width? Is the bigvis package for R not available for R version 3.0.1? Restart RStudio and then re-install the main package allowing for it to run through the updates on the dependencies. Can I tell police to wait and call a lawyer when served with a search warrant? Why is there a voltage on my HDMI and coaxial cables? I'm having the same error when building my library's documentation with Github Actions (check here). @Anirban166 you appear to be compiling all these packages from source; you'll find life much easier if you instead install binaries. How do I align things in the following tabular environment? @joycekang on which operating system are you installing pkgdown, and what version are you installing (CRAN or GitHub)? Try no and compare results. https://travis-ci.org/github/ramiromagno/gwasrapidd/jobs/740002831. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. install.packages("rlang") C, C++, FORTRAN) then on Windows install Rtools or on OS X install the developer tools accompanying XCode, and install the source version of the package via: On CRAN, you can tell if you'll need special tools to build the package from source by looking at the NeedsCompilation flag in the description. For some reason, the package was still there, but install.packages was only looking at the updated (and incompatible) version. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. - the incident has nothing to do with me; can I use this this way? Version: 1.5-9.7: Depends: R ( 4.1.0) . hi I get the following error could you help me please package RTN is not available (for R version 3.0.1) pinky1 March 21, 2021, 1:20am #3 -- NN --> install_logs_.md. Thank you for attention I'm running a RNA-seq analysis so tried to install differents pkgs. I have tried to install Cairo using the command sudo apt-get install libcairo2-dev but I still get the same error. Policy. @Tmacphee13 @joycekang, installing on Linux, you need to install libharfbuzz using your Linux package distribution manager (e.g. In many cases are just mirrors out of date. Here's how to install it via apt for ubuntu: The easiest way to resolve this problem is to install a binary, e.g. If so, how close was it? I changed the Action file to run install.packages("pkgdown") instead of remotes::install_dev("pkgdown") as I needed the site to be updated today. Author: Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth, Maintainer: Yunshun Chen , Gordon Smyth , Aaron Lun , Mark Robinson . On Windows, this is most easily done via the installr package. Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. What is \newluafunction? DESeq2 installation Error (ERROR: dependency locfit is not available for package DESeq2), Traffic: 186 users visited in the last hour, User Agreement and Privacy ERROR: dependency 'rlang' is not available for package 'dbplyr'. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce read counts, including ChIP-seq, ATAC-seq, Bisulfite-seq, SAGE and CAGE. Find centralized, trusted content and collaborate around the technologies you use most. Hello everybody! To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Disconnect between goals and daily tasksIs it me, or the industry? It allows loading package from given directory: Thanks for contributing an answer to Stack Overflow! (Fresh Ubuntu 20.04 LTS Setup). Suspected that this was the case. I am trying to install DESeq2 and I keep getting errors. hello, thanks for helping! By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Recovering from a blunder I made while emailing a professor. You mention 20.04 in the title, but then report your release as 14.04 via tag? R. To see which repositories R will look in for your package, and optionally select some additional ones. Learn more about Stack Overflow the company, and our products. If you want to install it: install.packages ("TSA") If you already have .tar.gz files. This doesn't seem to be working for kableExtra. It would appear that either versions 1.5-9.2 or 1.5-9.4 will be compatible with your R version, so maybe installing one of those ahead of DESeq2 will do the trick. RETURN ( Warning: cannot remove prior installation of package 'scales' The downloaded binary packages are in C:\Users\admin\AppData\Local\Temp\RtmpQXIjyl\downloaded_packages This function can install multiple packages with their dependencies using https://cran.rstudio.com/: This is what I finally could do for installing psych package in R-3.4.1 when I got the same warning, 2:downloaded it manually having tar.gz extension, 3:Chose the option "Package Archive File (.zip;.tar.gz)" for install packages in R, 4:browsed locally to the place where it was downloaded and clicked install. is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: -------------------------- [ERROR MESSAGE] ---------------------------, --------------------------------------------------------------------, ERROR: configuration failed for package systemfonts, * removing /usr/local/lib/R/4.0/site-library/systemfonts, installation of package systemfonts had non-zero exit status, ERROR: dependency systemfonts is not available for package textshaping, * removing /usr/local/lib/R/4.0/site-library/textshaping, installation of package textshaping had non-zero exit status, ERROR: dependencies systemfonts, textshaping are not available for package ragg, * removing /usr/local/lib/R/4.0/site-library/ragg, installation of package ragg had non-zero exit status, ERROR: dependency ragg is not available for package pkgdown, * removing /usr/local/lib/R/4.0/site-library/pkgdown, installation of package pkgdown had non-zero exit status, (converted from warning) installation of package systemfonts had non-zero exit status. So, maybe try updating your operating system? and what would happen then? Not the answer you're looking for? Additionally, some packages are available only via the sources for some or all platforms. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? providing code, data, or documentation. (Yes/no/cancel) to which you have answered yes. Why are Suriname, Belize, and Guinea-Bissau classified as "Small Island Developing States"? Browse other questions tagged. not via RStudio). I was using an out of date operating system for R and it wouldn't install DESeq2 which was my main objective. limit n n Asking for help, clarification, or responding to other answers. The main problem of that was that I couldnt install RCurl. ==================================================, to the PKG_CONFIG_PATH environment variable, --------------------------- [ANTICONF] --------------------------------. It may have a repository on GitHub/Bitbucket/Gitorious. Done libcairo2-dev is already the newest version (1.16.0-4ubuntu1). Relation between transaction data and transaction id. package is not available (for R version 2.15.2) In a case like this, the alternative to upgrading the R installation is the solution already mentioned. Installing package into C:/Users/dimarcantonio/Documents/R/win-library/3.2 It may have been archived (if it is no longer maintained and no longer passes R CMD check tests). DESeq2 installation Error (ERROR: dependency 'locfit' is not available for package 'DESeq2') 0 tsomakiank 0 @93aec3aa Last seen 9 months ago Greece Hello everybody! In the R 3.2.3 (new in 2016) there was a bug, preventing it some times from finding correct package. locfit: Local Regression, Likelihood and Density Estimation Local regression, likelihood and density estimation methods as described in the 1999 book by Loader. For R 3.6.3 you'll need Bioconductor 3.10: if (!requireNamespace ("BiocManager", quietly = TRUE)) install.packages ("BiocManager") BiocManager::install (version = "3.10") Then you install DESeq2: Is there a single-word adjective for "having exceptionally strong moral principles"? OOOh really! How Intuit democratizes AI development across teams through reusability. I am trying to install the R package ComplexHeatmap but I keep getting the error message that the the dependency Cairo is not available. How to fix "Attempted relative import in non-package" even with __init__.py, Install package from source throws "package not available" in R, package slidify not available as a binary package for R version 3.1.3, package gplots is not available for R version 3.0.2, warning: package grid is not available (for R version 3.1.2), not able to install fable package (error: is not available (for R version 3.4.2).

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